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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003168.1_4832_4911_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4832 - 4911
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCATCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAT
U12 Branch Point Sequence:
TCGCCCCCACCC
Flanking Amino Acid:
VVPAQPTLTQVTQCLTEGRT
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
62.1
0.3
1.4
72.5
43.5
Major PPT
71.8
0.49
0.9
62.5
38.7
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
42.7
-0.5
2.1
52.74
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017897
Chromosome:
PEDO01003168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019091
170 - 5100
4931