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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003184.1_21984_22485_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21984 - 22485
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
TATCATGCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTCTTTATCA
Flanking Amino Acid:
KNFPANATSSEKVVEEPITA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
78.1
36.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
68.8
0.42
0.9
61.9
39.4
Minor 5ss
37.7
-1.4
3.4
57.7
46.5
Minor BPS
77.7
0.86
1.5
87.09
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014573
Chromosome:
PEDO01003184.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015178
19156 - 28402
9247