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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003208.1_284_2220_R

Intron Information:

Intron Rank:
152967
Intron Class:
major
Intron Phase:
Intron Coordinates:
284 - 2220
Intron Length:
1937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTTTATTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
59.5
0.3
1.8
72.93
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029868
Chromosome:
PEDO01003208.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035858
21 - 2574
2554