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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003208.1_6274_6750_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6274 - 6750
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGTTCTGTAACT
Flanking Amino Acid:
FHADSVCKASNRRPSVYLPT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
77.5
0.62
0.9
70
35.6
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
69
0.67
2
88.47
36.7

Associated Gene:

Gene:
DDA1
Ensembl Gene ID:
ENSAPLG00000027911
Chromosome:
PEDO01003208.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020187
4756 - 7077
2322