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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003209.1_1547_2573_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1547 - 2573
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CACTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
CCCCCCCCCACT
Flanking Amino Acid:
DRYDLGQVIKTEEFCEIFRA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
73.1
0.52
0.9
65.3
35.8
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
40.8
-0.6
2.2
53.97
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028951
Chromosome:
PEDO01003209.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020006
897 - 2668
1772