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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003226.1_1000_1162_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1000 - 1162
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
ATGGGTGTGACA
Flanking Amino Acid:
SEETTEQTSRTSSPSQSVGR
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70.9
37.8
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
75.7
0.58
0.9
69.7
36.7
Minor 5ss
33.1
-1.9
3.1
36.3
40.5
Minor BPS
40.5
-0.7
2.3
51.23
41.3

Associated Gene:

Gene:
ANKRD24
Ensembl Gene ID:
ENSAPLG00000020721
Chromosome:
PEDO01003226.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021481
326 - 4802
4477
ENSAPLT00000033375
326 - 4802
4477
ENSAPLT00000027873
326 - 4802
4477
ENSAPLT00000023630
326 - 4802
4477