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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003226.1_1796_1885_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1796 - 1885
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTGCG
5'SS Class:
major
3'SS Sequence:
CGTGTCCCGCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CCCCCCCCATCG
Flanking Amino Acid:
LEQQEKQRQEQAEQDKGSLR
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60.7
42.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
58.9
0.2
1
51.4
39.3
Minor 5ss
37.2
-1.5
3.4
49.9
46.5
Minor BPS
38.4
-1
2
37.42
44.7

Associated Gene:

Gene:
ANKRD24
Ensembl Gene ID:
ENSAPLG00000020721
Chromosome:
PEDO01003226.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033375
326 - 4802
4477
ENSAPLT00000027873
326 - 4802
4477
ENSAPLT00000023630
326 - 4802
4477
ENSAPLT00000021481
326 - 4802
4477