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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003232.1_1396_1506_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1396 - 1506
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
GTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCCC
U12 Branch Point Sequence:
GTGTCCCCCCCG
Flanking Amino Acid:
RFLTYMFMHVGLEQLGFNAL
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
22.7
-1.7
4
48.8
46.3
Major PPT
68.8
0.42
0.8
61.8
28.9
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
29.9
-1.6
3.6
44.95
46.7

Associated Gene:

Gene:
RHBDL1
Ensembl Gene ID:
ENSAPLG00000029264
Chromosome:
PEDO01003232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026444
3 - 1962
1960