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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003282.1_8413_8490_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8413 - 8490
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATGCTCTCACCG
Flanking Amino Acid:
FIQKVETYNSVVRIAGSLGQ
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
46
-0.4
1.8
51.02
43.3

Associated Gene:

Gene:
PATL2
Ensembl Gene ID:
ENSAPLG00000003980
Chromosome:
PEDO01003282.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004074
6410 - 8828
2419