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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003293.1_1795_1871_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1795 - 1871
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CCCCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCCCCTATAT
Flanking Amino Acid:
PNTLMAHGVPVVRTNQCAGE
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.6
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.6
0.69
0.7
79.5
26
Minor 5ss
36.7
-1.5
2.9
50.4
39.3
Minor BPS
49.1
0.01
2
73.44
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025280
Chromosome:
PEDO01003293.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041898
224 - 3060
2837