Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003293.1_404_486_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

404 - 486

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAATTTG

5'SS Class:

strong_major

3'SS Sequence:

GTGCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

CCGTCCCCGACC

Flanking Amino Acid:

GKRKLSPEEEEYAGSGWNLN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

77.2

33.9

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

65.1

0.34

0.9

54.8

36.5

Minor 5ss

37.7

-1.4

48.7

47.5

Minor BPS

46.5

-0.2

1.9

54.51

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025280

Chromosome:

PEDO01003293.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041898

224 - 3060

2837