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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003315.1_120_239_F

Intron Information:

Intron Rank:
131939
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
120 - 239
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGCATCG
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AGTCTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.3
48.2
43.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
42.9
-0.8
3.2
57.2
47.1
Minor BPS
47.7
-0.1
1.7
64.71
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020821
Chromosome:
PEDO01003315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022726
21 - 1604
1584