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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003324.1_2183_2825_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2183 - 2825
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
AACCCTGTAACT
Flanking Amino Acid:
QKCTAKTPQEGPANELTKEM
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
81.2
0.7
0.8
80.5
31.5
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
50.9
0.11
2
68.76
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028599
Chromosome:
PEDO01003324.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047923
207 - 3416
3210