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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003337.1_1868_3607_R

Intron Information:

Intron Rank:
129961
Intron Class:
major
Intron Phase:
Intron Coordinates:
1868 - 3607
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
GTTTCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
72.7
0.71
1.5
80.58
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017118
Chromosome:
PEDO01003337.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046690
553 - 3904
3352