About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003337.1_1937_2626_F

Intron Information:

Intron Rank:
127413
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1937 - 2626
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTGCCAAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATATTTTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
48.4
-0
1.7
55.9
39.1
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
65.3
0.56
1.6
78.4
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018710
Chromosome:
PEDO01003337.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024362
1629 - 5465
3837
ENSAPLT00000023661
1865 - 5465
3601
ENSAPLT00000019002
1122 - 5465
4344
ENSAPLT00000047317
21 - 5465
5445
ENSAPLT00000043317
1122 - 5465
4344