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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003368.1_811_905_R

Intron Information:

Intron Rank:
150146
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
811 - 905
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGCCCT
5'SS Class:
weak_major
3'SS Sequence:
GATTTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GCGTCCCCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.2
0.19
1.3
53.6
45.1
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
69.1
0.43
1
63
38.3
Minor 5ss
36.9
-1.5
3.2
53.6
43.3
Minor BPS
46.3
-0.4
1.9
49.03
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028361
Chromosome:
PEDO01003368.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045586
399 - 1943
1545
ENSAPLT00000035932
399 - 1943
1545
ENSAPLT00000033893
399 - 1943
1545
ENSAPLT00000026852
399 - 1943
1545