Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003370.1_22815_23429_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22815 - 23429

Intron Length:

615

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAAGACA

5'SS Class:

major

3'SS Sequence:

TCTCTTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATAAC

U12 Branch Point Sequence:

GGGGTCATAACC

Flanking Amino Acid:

KVPGEKGCPAALPLSNIYET

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

67.4

37.4

Major BPS

65.3

0.38

1.1

66.2

36.5

Major PPT

0.88

0.6

84.2

23.7

Minor 5ss

-2.1

3.2

37.5

42.1

Minor BPS

48.8

-0.1

1.7

56.37

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004084

Chromosome:

PEDO01003370.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032739

15771 - 33837

18067

ENSAPLT00000004293

11979 - 33837

21859

ENSAPLT00000047291

12365 - 33837

21473