Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003370.1_24539_25032_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24539 - 25032

Intron Length:

494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

TGTCCCCTACAT

Flanking Amino Acid:

PIQIHHYPNGIVTVNCARLL

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.9

Major BPS

69.2

0.48

1.3

71.9

Major PPT

85.6

0.8

0.7

80.2

Minor 5ss

37.8

-1.4

42.6

44.5

Minor BPS

48.6

-0

2.1

72.82

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004084

Chromosome:

PEDO01003370.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047291

12365 - 33837

21473

ENSAPLT00000032739

15771 - 33837

18067

ENSAPLT00000004293

11979 - 33837

21859