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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003370.1_27948_28495_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27948 - 28495
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCTTT
5'SS Class:
major
3'SS Sequence:
GCTTGTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATGTTGTACCT
Flanking Amino Acid:
MDVLKADHRFSTLVAAIQSA
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
74.8
38.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.7
0.67
0.9
72.9
37.4
Minor 5ss
49.9
-0
2.8
73.2
43.7
Minor BPS
43.5
-0.4
2.2
62.09
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004084
Chromosome:
PEDO01003370.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047291
12365 - 33837
21473
ENSAPLT00000032739
15771 - 33837
18067
ENSAPLT00000004293
11979 - 33837
21859