Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003370.1_30619_31530_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30619 - 31530

Intron Length:

912

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTCAC

5'SS Class:

major

3'SS Sequence:

TTCTCCCGAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTCTCCCGAACA

Flanking Amino Acid:

MQGDKLEVSAKNNIIHVNKE

Intron Amino Acid Position:

733

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.3

59.7

41.3

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

69.9

0.45

65.9

34.6

Minor 5ss

30.9

-2.2

2.9

40.1

38.9

Minor BPS

63.1

0.41

1.8

77.3

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004084

Chromosome:

PEDO01003370.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047291

12365 - 33837

21473

ENSAPLT00000032739

15771 - 33837

18067

ENSAPLT00000004293

11979 - 33837

21859