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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003426.1_1405_1498_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1405 - 1498
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCGTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CTGGTCTCACCT
Flanking Amino Acid:
VPDLDVLEGSSLSEETFYGP
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
82.9
0.74
0.8
77
31.7
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
46.5
-0.1
1.9
62.85
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025615
Chromosome:
PEDO01003426.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038566
21 - 1539
1519