Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003458.1_4085_5597_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4085 - 5597

Intron Length:

1513

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCT|GCGGGTTCT

5'SS Class:

weak_major

3'SS Sequence:

CTTATATCCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

TATATCTTACTG

Flanking Amino Acid:

LFIYLFIYLTLDILYIYDTF

Intron Amino Acid Position:

332

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.6

0.04

1.4

58.6

40.4

Major BPS

70.4

0.51

67.1

39.4

Major PPT

70.8

0.47

0.9

62.8

38.5

Minor 5ss

28.6

-2.5

4.2

50.4

Minor BPS

54.7

0.01

1.7

60.66

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021786

Chromosome:

PEDO01003458.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045991

4038 - 6900

2863