Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003487.1_1122_1543_R

Intron Information:

Intron Rank:

142527

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1122 - 1543

Intron Length:

422

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATGAAG

5'SS Class:

major

3'SS Sequence:

CCCAGGGGTGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGATGAA

U12 Branch Point Sequence:

GGAAGATGAAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

67.5

Major BPS

51.5

0.04

1.2

43.5

39.2

Major PPT

46.8

-0.1

1.2

39.3

38.1

Minor 5ss

26.2

-2.7

2.9

30.2

43.1

Minor BPS

34.5

-1.3

33.12

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023981

Chromosome:

PEDO01003487.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028069

605 - 1877

1273