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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003491.1_629_719_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
629 - 719
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TGCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGATGCTGACAG
Flanking Amino Acid:
HADNLRLRTTEGGDPYRLYN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
71.5
0.48
0.8
65.3
30.5
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
39.1
-0.9
2.1
40.3
42.7

Associated Gene:

Gene:
GANAB
Ensembl Gene ID:
ENSAPLG00000025733
Chromosome:
PEDO01003491.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040434
184 - 3473
3290
ENSAPLT00000034638
294 - 3473
3180
ENSAPLT00000033068
294 - 3473
3180