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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_102346_102534_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102346 - 102534
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCCCTTACA
Flanking Amino Acid:
HASVLVAQAQEKLKDYRSAI
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
100
1.24
0.5
100
0
Major PPT
83.2
0.75
0.8
76.9
31.9
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
60.8
0.33
2
76.43
40.4

Associated Gene:

Gene:
TTC25
Ensembl Gene ID:
ENSAPLG00000001436
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001444
93156 - 104781
11626