Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_15759_19187_R

Intron Information:

Intron Rank:

153150

Intron Class:

major

Intron Phase:

Intron Coordinates:

15759 - 19187

Intron Length:

3429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTTGGTCCC

5'SS Class:

major

3'SS Sequence:

TCCTTCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

AGCTCCCTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.3

0.29

1.3

53.1

44.1

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

0.68

0.7

72.7

32.1

Minor 5ss

30.9

-2.2

2.9

38.9

Minor BPS

64.5

0.45

1.7

71.62

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029971

Chromosome:

PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018832

14014 - 19563

5550