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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_25184_25456_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25184 - 25456
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CCTTCTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ACGTCTTAAAAC
Flanking Amino Acid:
FKHDPAAWEAAQSMIPINEP
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
74
0.54
0.7
69.4
24.4
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
49.7
-0
1.8
57.28
41.8

Associated Gene:

Gene:
JUP
Ensembl Gene ID:
ENSAPLG00000014851
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015520
24710 - 34374
9665