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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_27180_30295_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27180 - 30295
Intron Length:
3116

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCTCGTGCG
5'SS Class:
major
3'SS Sequence:
TCGGCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGCTCTGACCT
Flanking Amino Acid:
LGQLAEVLSWEGLDGVLKIL
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.4
59.5
43.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
72.8
0.51
0.9
65.8
36
Minor 5ss
17.5
-3.7
3.5
16.5
28.3
Minor BPS
48.5
-0
1.8
65.52
45

Associated Gene:

Gene:
JUP
Ensembl Gene ID:
ENSAPLG00000014851
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015520
24710 - 34374
9665