Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_30343_30646_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

30343 - 30646

Intron Length:

304

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCTGCTGCC

5'SS Class:

weak_major

3'SS Sequence:

CTTCCACATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

CCTTCCACATCC

Flanking Amino Acid:

AIVEAGKRLWGKTTWCLGQL

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.8

0.04

1.4

59.6

40.9

Major BPS

69.8

0.49

37.5

Major PPT

72.3

0.5

0.9

37.6

Minor 5ss

23.7

-3

3.9

28.1

36.3

Minor BPS

46.3

-0.3

2.1

59.37

45.5

Associated Gene:

Gene:

JUP

Ensembl Gene ID:

ENSAPLG00000014851

Chromosome:

PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015520

24710 - 34374

9665