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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_31505_32181_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31505 - 32181
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGG
5'SS Class:
major
3'SS Sequence:
CCTGCGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACGC
Flanking Amino Acid:
GGIPALVRMLSSPVESVLFY
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
51.7
45.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
69.7
0.44
0.9
61.5
35
Minor 5ss
27.6
-2.6
3.6
38.4
46.6
Minor BPS
38.7
-0.8
2.2
44.37
43.4

Associated Gene:

Gene:
JUP
Ensembl Gene ID:
ENSAPLG00000014851
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015520
24710 - 34374
9665