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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_54091_55748_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54091 - 55748
Intron Length:
1658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CCTCCCTCCATC
Flanking Amino Acid:
YQYLHYALFKSNKIEKAVSA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
80.2
0.68
0.7
72.7
32.1
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
46.7
-0.2
2
55.52
43.3

Associated Gene:

Gene:
P3H4
Ensembl Gene ID:
ENSAPLG00000015731
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016391
51658 - 56225
4568