About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_5444_5778_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5444 - 5778
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
CTTCTCTCCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023688
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024350
5342 - 6299
958