About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_58006_59594_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58006 - 59594
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCCC
5'SS Class:
major
3'SS Sequence:
CCTTCGCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACGG
Flanking Amino Acid:
TFKDGKKFDSSYDRGATVAG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
54
43.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
71
0.47
0.8
61.4
35
Minor 5ss
43.6
-0.7
3.1
60.3
44.3
Minor BPS
36.7
-1.1
2.2
36.1
45.5

Associated Gene:

Gene:
FKBP10
Ensembl Gene ID:
ENSAPLG00000015733
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023218
57812 - 63339
5528
ENSAPLT00000016401
57812 - 63339
5528
ENSAPLT00000032775
57812 - 63693
5882
ENSAPLT00000029986
57812 - 63339
5528