About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_59741_60147_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
59741 - 60147

Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTAAGGGGC

5'SS Class:
major

3'SS Sequence:
GCCGCCCCTGTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCCTAAC

U12 Branch Point Sequence:
TCTCCCTGCCCT

Flanking Amino Acid:
PHLGYGSIGVAGLIPPDATL

Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.3
0.67
1.1
65.4
40.4

Major BPS
59.7
0.24
1.1
61.2
32.6

Major PPT
62.3
0.28
0.8
54.5
30.9

Minor 5ss
29.1
-2.4
3.5
32.5
42.6

Minor BPS
39.4
-0.7
3.6
70.08
46.5

Associated Gene:

Gene:
FKBP10

Ensembl Gene ID:

Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

57812 - 63339
5528

57812 - 63693
5882

57812 - 63339
5528

57812 - 63339
5528