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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_60625_60707_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60625 - 60707
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
CCCCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CCAGGCTGAGCC
Flanking Amino Acid:
PFLAYGEKGYGTVIPPQASL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
61.5
44.7
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
74.1
0.54
0.8
64.5
30.9
Minor 5ss
37.4
-1.4
3.1
44.4
44.4
Minor BPS
39.9
-0.7
2
43.45
44.1

Associated Gene:

Gene:
FKBP10
Ensembl Gene ID:
ENSAPLG00000015733
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029986
57812 - 63339
5528
ENSAPLT00000023218
57812 - 63339
5528
ENSAPLT00000016401
57812 - 63339
5528
ENSAPLT00000032775
57812 - 63693
5882