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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_60898_61127_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60898 - 61127
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGGGAT
U12 Branch Point Sequence:
GTGCTCGGGATG
Flanking Amino Acid:
TLMDGTLFDSSYSRNHTYNT
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
47.5
-0.1
1.5
45
47.8
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
38.9
-1
2
40.39
37.9

Associated Gene:

Gene:
FKBP10
Ensembl Gene ID:
ENSAPLG00000015733
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032775
57812 - 63693
5882
ENSAPLT00000029986
57812 - 63339
5528
ENSAPLT00000023218
57812 - 63339
5528
ENSAPLT00000016401
57812 - 63339
5528