Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_61274_61372_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61274 - 61372

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CCTCTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAG

U12 Branch Point Sequence:

GCCAGCTGAGAT

Flanking Amino Acid:

PHLAYGENGAGDKIPGSAVL

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

60.8

0.27

1.6

71.4

45.1

Major PPT

84.4

0.77

0.7

76.2

32.4

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

38.1

-0.8

47.61

44.2

Associated Gene:

Gene:

FKBP10

Ensembl Gene ID:

ENSAPLG00000015733

Chromosome:

PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029986

57812 - 63339

5528

ENSAPLT00000023218

57812 - 63339

5528

ENSAPLT00000016401

57812 - 63339

5528

ENSAPLT00000032775

57812 - 63693

5882