Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_70830_72035_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70830 - 72035

Intron Length:

1206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

CTCTCTTCAACA

Flanking Amino Acid:

AKKAKPTAPLDSIPASRPGS

Intron Amino Acid Position:

442

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

73.3

37.4

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

76.8

0.6

0.8

72.9

30.5

Minor 5ss

34.6

-1.7

2.8

39.6

39.8

Minor BPS

64.8

0.46

1.6

71.01

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020285

Chromosome:

PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048024

70777 - 83805

13029