About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_72127_72540_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72127 - 72540
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTGAATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTCCCTTACTG
Flanking Amino Acid:
FLLNASGSPSTPAPSRTASF
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.3
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74
0.54
1
69.6
41.2
Minor 5ss
36.5
-1.5
2.8
45.9
42.3
Minor BPS
60.8
0.2
1.7
65.65
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020285
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048024
70777 - 83805
13029