Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_76707_77652_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

76707 - 77652

Intron Length:

946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

AAATTTTTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTGTGTTTAAAT

Flanking Amino Acid:

LLQYAPANKKDVLASFICGL

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

75.5

40.6

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

79.8

0.67

0.9

73.9

40.5

Minor 5ss

40.6

-1

2.8

48.1

41.6

Minor BPS

62.7

0.48

1.9

80.75

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020285

Chromosome:

PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048024

70777 - 83805

13029