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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_78509_83583_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78509 - 83583
Intron Length:
5075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTTGCA
5'SS Class:
major
3'SS Sequence:
TTTCTGCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTTATT
Flanking Amino Acid:
ELWTNPCPHEIANAKGILKN
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
64.1
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
76.8
32
Minor 5ss
26.5
-2.7
3.1
33.1
41.8
Minor BPS
55.8
0.26
1.9
77.76
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020285
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048024
70777 - 83805
13029