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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_94215_94505_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94215 - 94505
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATTT
Flanking Amino Acid:
SLQNDKTFPKGLYQKAETLY
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.9
41.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
36
-1.6
3.4
50.2
46.4
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
TTC25
Ensembl Gene ID:
ENSAPLG00000001436
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001444
93156 - 104781
11626