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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003518.1_94660_96626_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94660 - 96626
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TCTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGAACA
Flanking Amino Acid:
SQEAIVNCIGSPSSVKLENK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.9
41.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
41.4
-1
2.9
52.4
38.7
Minor BPS
66.4
0.51
1.7
79.01
36.4

Associated Gene:

Gene:
TTC25
Ensembl Gene ID:
ENSAPLG00000001436
Chromosome:
PEDO01003518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001444
93156 - 104781
11626