Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003524.1_2082_2489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2082 - 2489

Intron Length:

408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CTGCGCCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

GGGTGCTGATGC

Flanking Amino Acid:

GAFIVLPLAKTGRVDKNHPL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

72.9

0.52

0.9

65.3

36.1

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

38.8

-0.8

2.2

44.52

43.2

Associated Gene:

Gene:

CORO6

Ensembl Gene ID:

ENSAPLG00000019331

Chromosome:

PEDO01003524.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018856

958 - 2687

1730