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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003535.1_5849_5957_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5849 - 5957
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGCTGTA
5'SS Class:
major
3'SS Sequence:
TGCTGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CGCTGCTGATCG
Flanking Amino Acid:
WDHPAVSSDPDPSVTQLTST
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.2
59.7
41.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.7
0.49
0.9
65.3
36.2
Minor 5ss
35.5
-1.7
3.6
48.2
47.9
Minor BPS
42.3
-0.7
2.1
44.48
47.2

Associated Gene:

Gene:
SCAMP2
Ensembl Gene ID:
ENSAPLG00000011321
Chromosome:
PEDO01003535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011796
5632 - 9106
3475