Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003535.1_6396_6522_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6396 - 6522

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCGAC

U12 Branch Point Sequence:

GCTTCTCGACCT

Flanking Amino Acid:

LQTSVEPTPQAVAAAAQAGL

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.1

37.5

Major BPS

51.3

0.03

1.3

52.1

43.1

Major PPT

78.9

0.65

0.7

75.7

26.3

Minor 5ss

25.6

-2.8

3.1

31.9

42.9

Minor BPS

-0.2

66.07

44.4

Associated Gene:

Gene:

SCAMP2

Ensembl Gene ID:

ENSAPLG00000011321

Chromosome:

PEDO01003535.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037170

5205 - 9106

3902

ENSAPLT00000011796

5632 - 9106

3475