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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003535.1_7690_8128_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7690 - 8128

Intron Length:

439

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCCTCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CCATGCTCACCC

Flanking Amino Acid:

QAVGIPGWGDSGWIAALSEL

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

78.1

0.63

0.7

72.5

25.6

Minor 5ss

29.9

-2.3

3.4

45.6

Minor BPS

43.3

-0.5

2.2

50.78

Associated Gene:

Gene:

SCAMP2

Ensembl Gene ID:

ENSAPLG00000011321

Chromosome:

PEDO01003535.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037170

5205 - 9106

3902

ENSAPLT00000011796

5632 - 9106

3475