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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003535.1_8247_8364_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8247 - 8364
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGATAT
U12 Branch Point Sequence:
AGGCTGATATTT
Flanking Amino Acid:
AVLSLFLLKQVHSLYRRTGA
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
51.8
0.04
1.3
50.4
43.9
Major PPT
73.5
0.53
0.7
65
30.7
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
36.4
-0.9
2.1
48.85
38.4

Associated Gene:

Gene:
SCAMP2
Ensembl Gene ID:
ENSAPLG00000011321
Chromosome:
PEDO01003535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011796
5632 - 9106
3475