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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003560.1_1801_1881_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1801 - 1881
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
GGCCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CCCTTTCCAACA
Flanking Amino Acid:
NGLLCTIQGKLQRSDWDSLS
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
62.2
0.28
0.9
54.1
30.9
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
44.7
-0.4
1.8
50.85
41.4

Associated Gene:

Gene:
GPAA1
Ensembl Gene ID:
ENSAPLG00000023434
Chromosome:
PEDO01003560.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018465
21 - 3566
3546