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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003560.1_187_258_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
187 - 258
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCGGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TCCCCACTGAGC
Flanking Amino Acid:
AAAAVRPTGPRPVLAALLVL
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.1
42.1
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
75.8
0.58
0.9
72.1
37.9
Minor 5ss
34.6
-1.7
2.8
41
45.3
Minor BPS
40.7
-0.7
2.1
49.12
41.1

Associated Gene:

Gene:
GPAA1
Ensembl Gene ID:
ENSAPLG00000023434
Chromosome:
PEDO01003560.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018465
21 - 3566
3546